Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015902457.1_cds_XP_016452485.1_46720
CDS Infomation

[gene=LOC107777039] [db_xref=GeneID:107777039] [protein=pentatricopeptide repeat-containing protein At2g20540-like] [protein_id=XP_016452485.1] [location=8209..9795] [gbkey=CDS]
Sequence

ATGTCAATATGCACAAAAAGATGCCTTTTCCTACTAGAGAGATGCAGGAATATGAAGCAA
CTCAAGCAAGCATACGCCCAAGTAATCACATGTGGACTTGGGCAAAATAGCTTTGCCTTG
AGCAGGCTGTTGGCTTTCTGTTCACACCCTAATCTTGGTAGTCCAACTTATGGATGGAAA
ATCTTTGAACAAATACAAGAACCCACAATTTGCATTTTTAATACAATGATCAAAGCTTTC
TTGCTCAAGGGCGAGCTCAATAGAACCATAGAGATATACAAAAATATGTTGAAAATTGGA
ATGTACCCTGATAATTATACACTCCCTTATGTCTTGAAAGCTTGTGCCAGAATGAAAAGT
TGTAATCTTGGCGAGTTGGTTCATGGGCAAATCTTGAAATTGGGGTTCTTGATTGATATT
TTTGTGGGTAATACTTTAATAGCAATGTACACTGCGATTGACAATGTGGAAGCTGCAAGA
TTGGTTTTTAATGAGATTCCTTGCAATTGTGTTGTGTCTTGGACTGTTTTGATTTCTGGG
TATGCTAAAAGAGGGGATGTTTATGAAGCAAGATTAAGTTTTGAGGAATGTCCAGTGAAA
GATAGAGGAGTGTGGGGCTCTATGATATCTGGTTATGTACAAAATAATTGTTTTAAAGAA
GGGCTAAAATTGTTTAGGCAAATGCAAATGACTGGGATTGATCCTGATGAGGCCATTTTT
GTTAGTGTACTTTCTGCTTGTGCTCATTTAGGTTCTCTTGATATTGGAATTTGGATTCAT
AGATATGTGGAGAAGTTAAGAATGTCAATGAGTCTTAAATTAGGCACTGCTCTTATTGAT
ATGTATGCGAAATGTGGTTGCTTGGATATTGCAGAGGAACTGTTCGATGAAATGCCTCAA
AGAGACCTTATTTGTTGGAATGCTATGATCTCAGGATTTGCTATGAATGGAAATGGTTCA
AAAGCCCTACAGTTATTCAATGAAATGCAAAGTGCCGGGATTAGGCCGGATGATGTTACA
TTTGTTTCAATGTTTACTGCTTGTAGTTATGCAGGCATGGCAAATGAAGGTCTAAATATG
TTGAATTTAATGTGTAATGTGTACCATATTGAGCCCAAAGGTGAACATTATGGATGCATT
ATCGACGTCCTCAGCAAAGTCGGGCTGCTAGAGGAAGCAAAGAAGATAGTCCAAAACATG
CCTAATTTGAGTGTTCCTTCTGAAGAAGCTATAGCTTGGAGAGCATTACTAAGCGCCTTT
GGGAATGATGGACTAGTCGATTTGGCGGAGGCTGCTGCTGAGAGGATTGTGCAGTTAGAA
AGGCATAGCGGAGCATACGTTCTACTCTCTAATATTTATGTTGCAGCCGGTAAACATGAT
GGTGCAAGAAGGATAAGGAAGAAGATGAAAAGCCAATATATAGACAAGGTACCAGGTTGC
AGCTCCCTTGAGATCACTGGTGTTGTTCATGAGTTCATTGCAGGTGAGAAAACTCACCCT
CAATTGGTTCGAATCCATGAACTTTTGGAAACTATTAACAATCAATTCGATTATAGTGCA
GATGTACTACATGGTTCTGACACTTGA

Peptide Sequence

PEP ID

XP_016452485.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At2g20540-like [Nicotiana tabacum]
Sequence

MSICTKRCLFLLERCRNMKQLKQAYAQVITCGLGQNSFALSRLLAFCSHPNLGSPTYGWK
IFEQIQEPTICIFNTMIKAFLLKGELNRTIEIYKNMLKIGMYPDNYTLPYVLKACARMKS
CNLGELVHGQILKLGFLIDIFVGNTLIAMYTAIDNVEAARLVFNEIPCNCVVSWTVLISG
YAKRGDVYEARLSFEECPVKDRGVWGSMISGYVQNNCFKEGLKLFRQMQMTGIDPDEAIF
VSVLSACAHLGSLDIGIWIHRYVEKLRMSMSLKLGTALIDMYAKCGCLDIAEELFDEMPQ
RDLICWNAMISGFAMNGNGSKALQLFNEMQSAGIRPDDVTFVSMFTACSYAGMANEGLNM
LNLMCNVYHIEPKGEHYGCIIDVLSKVGLLEEAKKIVQNMPNLSVPSEEAIAWRALLSAF
GNDGLVDLAEAAAERIVQLERHSGAYVLLSNIYVAAGKHDGARRIRKKMKSQYIDKVPGC
SSLEITGVVHEFIAGEKTHPQLVRIHELLETINNQFDYSADVLHGSDT

Transcript Sequence

Gene sequence data has not been registered.